《生物固氮进展:类微生物固氮酶》

  • 来源专题:土壤、生物与环境
  • 编译者: 李卫民
  • 发布时间:2017-05-31
  • Inspired by a natural process found in certain bacteria, a team of Caltech researchers is inching closer to a new method for producing fertilizer that could some day hold benefits for farmers -- particularly in the developing world -- while also shedding light on a biological mystery.

    Fertilizers are chemical sources of nutrients that are otherwise lacking in soil. Most commonly, fertilizers supply the element nitrogen, which is essential for all living things, as it is a fundamental building block of DNA, RNA, and proteins. Nitrogen gas is very abundant on Earth, making up 78 percent of our atmosphere. However, most organisms cannot use nitrogen in its gaseous form.

    To make nitrogen usable, it must be "fixed" -- turned into a form that can enter the food chain as a nutrient. There are two primary ways that can happen, one natural and one synthetic.

    Nitrogen fixation occurs naturally due to the action of microbes that live in nodules on plant roots. These organisms convert nitrogen into ammonia through specialized enzymes called nitrogenases. The ammonia these nitrogen-fixing organisms create fertilizes plants that can then be consumed by animals, including humans. In a 2008 paper appearing in the journal Nature Geoscience, a team of researchers estimated that naturally fixed nitrogen provides food for roughly half of the people living on the planet.

    The other half of the world's food supply is sustained through artificial nitrogen fixation and the primary method for doing this is the Haber-Bosch process, an industrial-scale reaction developed in Germany over 100 years ago. In the process, hydrogen and nitrogen gases are combined in large reaction vessels, under intense pressure and heat in the presence of a solid-state iron catalyst, to form ammonia.

    "The gases are pressurized up to many hundreds of atmospheres and heated up to several hundred degrees Celsius," says Caltech's Ben Matson, a graduate student in the lab of Jonas C. Peters, Bren Professor of Chemistry and director of the Resnick Sustainability Institute. " With the iron catalyst used in the industrial process, these extreme conditions are required to produce ammonia at suitable rates."

    In a recent paper appearing in ACS Central Science, Matson, Peters, and their colleagues describe a new way of fixing nitrogen that's inspired by how microbes do it.

    Nitrogenases consist of seven iron atoms surrounded by a protein skeleton. The structure of one of these nitrogenase enzymes was first solved by Caltech's Douglas Rees, the Roscoe Gilkey Dickinson Professor of Chemistry. The researchers in Peters' lab have developed something similar to a bacterial nitrogenase, albeit much simpler -- a molecular scaffolding that surrounds a single iron atom.

    The molecular scaffolding was first developed in 2013 and, although the initial design showed promise in fixing nitrogen, it was unstable and inefficient. The researchers have improved its efficiency and stability by tweaking the chemical bath in which the fixation reaction occurs, and by chilling it to approximately the temperature of dry ice (-78 degrees Celsius). Under these conditions, the reaction converts 72 percent of starting material into ammonia, a big improvement over the initial method, which only converted 40 percent of the starting material into ammonia and required more energy input to do so.

    Matson, Peters, and colleagues say their work holds the potential for two major benefits:

    •Ease of production: Because the technology being developed does not require high temperatures or pressures, there is no need for the large-scale industrial infrastructure required for the Haber-Bosch process. This means it might some day be possible to fix nitrogen in smaller facilities located closer to where crops are grown.

    "Our work could help to inspire new technologies for fertilizer production," says Trevor del Castillo, a Caltech graduate student and co-author of the paper. "While this type of a technology is unlikely to displace the Haber-Bosch process in the foreseeable future, it could be highly impactful in places that that don't have a very stable energy grid, but have access to abundant renewable energy, such as the developing world. There's definitely room for new technology development here, some sort of 'on demand' solar-, hydroelectric-, or wind-powered process."

    •Understanding natural nitrogen fixation: The nitrogenase enzyme is complicated and finicky, not working if the ambient conditions are not right, which makes it difficult to study. The new catalyst, on the other hand, is relatively simple. The team believes that their catalyst is performing fixation in a conceptually similar way as the enzyme, and that its relative simplicity will make it possible to study fixation reactions in the lab using modern spectroscopic techniques.

    "One fascinating thing is that we really don't know, on a molecular level, how the nitrogenase enzyme in these bacteria actually turns nitrogen into ammonia. It's a large unanswered question," says graduate student Matthew Chalkley, also a co-author on the paper.

    Peters says their research into this catalyst has already given them a deeper understanding of what is happening during a nitrogen-fixing reaction.

    "An advantage of our synthetic iron nitrogenase system is that we can study it in great detail," he says. "Indeed, in addition to significantly improving the efficiency of this new catalyst for nitrogen fixation, we have made great progress in understanding, at the atomic level, the critical bond-breaking and making-steps that lead to ammonia synthesis from nitrogen."

    If processes of this type can be further refined and their efficiency increased, Peters adds, they may have applications outside of fertilizer production as well.

    "If this can be achieved, distributed solar-powered ammonia synthesis can become a reality. And not just as a fertilizer source, but also as an alternative, sustainable, and storable chemical fuel," he says.

    The paper, "Catalytic N2-to-NH3 Conversion by Fe at Lower Driving Force: A Proposed Role for Metallocene-Mediated PCET," appears in the February issue of ACS Central Science. Caltech undergraduate Joseph P. Roddy is also a co-author. Funding for this project came from the National Institutes of Health and the Gordon and Betty Moore Foundation. Related work is also funded by the Resnick Sustainability Institute.

    --------------------------------------------------------------------------------

    Journal Reference:

    1.Matthew J. Chalkley, Trevor J. Del Castillo, Benjamin D. Matson, Joseph P. Roddy, Jonas C. Peters. Catalytic N2-to-NH3 Conversion by Fe at Lower Driving Force: A Proposed Role for Metallocene-Mediated PCET. ACS Central Science, 2017; 3 (3): 217 DOI: 10.1021/acscentsci.7b00014

    --------------------------------------------------------------------------------

  • 原文来源:https://www.sciencedaily.com/releases/2017/05/170530140710.htm
相关报告
  • 《微生物固氮的分子调控机制方面取得进展》

    • 来源专题:生物育种
    • 编译者:季雪婧
    • 发布时间:2024-07-31
    •     近日,中国科学院微生物研究所郑艳宁研究团队在Cell Reports发表题为“Formation of NifA-PII complex represses ammonium-sensitive nitrogen fixation in diazotrophic proteobacteria lacking NifL”的研究论文,该研究揭示了氮调控蛋白PII对固氮酶转录活化子NifA在转录和翻译后水平的调控机制,进一步加深了对固氮微生物如何响应环境中的氮水平并调控微生物固氮过程的理解,有助于发展更加高效的微生物固氮技术,推动化肥减施与绿色农业的可持续发展。      微生物固氮过程是由固氮酶催化完成的,作为地球上最复杂的金属酶之一,固氮酶的表达和分子成熟过程受到环境氮水平的严格调控,限制了微生物固氮过程的持续高效进行。NifA是固氮酶基因簇的转录活化子,但其自身转录和翻译后调控机制尚不清楚。     研究团队通过多组学分析,蛋白结构解析与模拟,以及体内遗传和体外生化功能验证等手段,发现在具有固氮功能但缺乏NifL蛋白的变形菌中,不同的PII蛋白通过尿苷酰(UMP)化修饰来介导其与NifA的相互作用。在高铵培养条件下的沼泽红假单胞菌中,未UMP化的PII蛋白GlnK1结合NifA,形成无活性的NifA-GlnK1复合物,进而抑制固氮酶的表达。而在低铵或固氮条件下,UMP化修饰的PII蛋白GlnK2UMP由于空间位阻无法与NifA进行结合,进而使NifA能够形成有活性的六聚体,同时GlnK2UMP显著促进了NifA的表达,从而进一步提升了固氮酶的表达水平和微生物固氮速率。
  • 《中国植保所合作阐述增强生物固氮的纳米策略》

    • 来源专题:农业生物安全
    • 编译者:李周晶
    • 发布时间:2023-05-31
    • 近日,中国农业科学院植物保护研究所与国内外多家单位合作,在《自然-纳米技术》(Nature Nanotechnology)(影响因子40.523)发表题为“Nano-enabled strategies to enhance biological nitrogen fixation”的文章。 文中指出,减少氮肥的施用是缓解粮食不安全和全球变暖的关键战略,提高生物固氮能力是加强粮食安全生产的有效策略。天然的生物固氮系统受到多种因素的制约,虽然有益微生物可通过各种机制增强生物固氮,包括激素调节和养分输送,但在田间使用成本较高,因此需要开发可持续增强生物固氮的新策略。基于纳米材料靶向递送机制、精密释放以及对植物生长的调节作用等特点,科学家们提出了改善生物固氮的纳米策略(图1)。将纳米材料作为靶向特定细胞器递送平台,将有助于增强光合作用,支持高效生物固氮。 全球气候变化迅速,提高生物固氮是减少合成氮肥使用、减轻温室气体排放的重要途径,开发固氮谷类作物一直是农业科学家的长期目标。纳米技术可将基因直接递送到叶绿体中,促进固氮作用,纳米材料可实现精确递送和调节植物生长,纳米策略可扩展到更为广泛的植物物种,具备广阔的应用前景。